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Publications

(Full list of publications: Google Scholar PubMed)

* Shared first authors
** Shared corresponding/senior authors

2022

2021

2020

2019

2018

2017

Previous Years

  • Díaz-Villamarín X, Dávila-Fajardo CL, Martínez-González LJ, Carmona-Sáez P, Sánchez-Ramos J, Álvarez Cubero MJ, Salmerón-Febres LM, Cabeza Barrera J, Fernández-Quesada F. Genetic polymorphisms influence on the response to clopidogrel in peripheral artery disease patients following percutaneous transluminal angioplasty. Pharmacogenomics. 2016. Q3 PMID: 27464309
  • Melero JT, Ortega FG, Gonzalez AM, Carmona-Saez P, Garcia Puche JL, Sugarbaker PH, Delgado M, Lorente JA, Serrano MJ. Prognostic factor analysis of circulating tumor cells in peripheral blood of patients with peritoneal carcinomatosis of colon cancer origin treated with cytoreductive surgery plus an intraoperative hyperthermic intraperitoneal chemotherapy procedure (CRS + HIPEC). Surgery 2016 .D1. PMID: 26518392
  • Alvarez-Cubero MJ, Martinez-Gonzalez LJ, Saiz M, Carmona-Saez P, Alvarez JC, Pascual-Geler M, Lorente JA, Cozar JM. Prognostic role of genetic biomarkers in clinical progression of prostate cancer.Exp Mol Med. 2015. Q1 PMID: 26251261
  • Gómez Peña C, Dávila-Fajardo CL, Martínez-González LJ, Carmona-Sáez P, Soto Pino MJ, Sánchez Ramos J, Moreno Escobar E, Blancas I, Fernández JJ, Fernández D, Correa C, Cabeza Barrera J. Influence of the HER2 Ile655Val polymorphism on trastuzumab-induced cardiotoxicity in HER2-positive breast cancer patients: a meta-analysis. Pharmacogenet Genomics. 2015. Q2 PMID: 26049584
  • Toro-Domínguez D, Carmona-Sáez P**, Alarcón-Riquelme ME**. Shared signatures between rheumatoid arthritis, systemic lupus erythematosus and Sjögren’s syndrome uncovered through gene expression meta-analysis. Arthritis Res Ther. 2014. Q2 PMID: 25466291
  • Anton MA, Gorostiaga D, Guruceaga E, Segura V, Carmona-Saez P, Pascual-Montano A, Pio R, Montuenga LM, Rubio A.SPACE: an algorithm to predict and quantify alternatively spliced isoforms using microarrays.Book Chapter. Bioinformatics: The Impact of Accurate Quantification on Proteomic and Genetic Analysis and Research. ISBN 9781771880190
  • C. Borgelt, X. Yang, R. Nogales-Cadenas, P. Carmona-Saez, A. Pascual-Montano. Finding closed frequent item sets by intersecting transactions. 2011. Proceedings of the 14th International Conference on Extending Database Technology, 367-37. DOI: 10.1145/1951365.1951410
  • Vazquez M, Nogales-Cadenas R, Arroyo J, Botías P, García R, Carazo JM, Tirado F, Pascual-Montano A, Carmona-Saez P. MARQ: an online tool to mine GEO for experiments with similar or opposite gene expression signatures. Nucleic Acids Res. 2010. D1 PMID: 20513648
  • Kökény S, Papp J, Weber G, Vaszkó T, Carmona-Saez P, Oláh E. Ribavirin acts via multiple pathways in inhibition of leukemic cell proliferation. Anticancer Res. 2009. Q4 PMID: 19528454
  • Nogales-Cadenas R*, Carmona-Saez P*, Vazquez M, Vicente C, Yang X, Tirado F, Carazo JM, Pascual-Montano A. GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information. Nucleic Acids Res. 2009. D1 PMID: 19465387
  • M. Vázquez, R. Nogales, P. Carmona-Saez, A. Pascual, J. Pavón. Rbbt: a framework for fast bioinformatics development with ruby. Book Chapter: Advances in Bioinformatics, Springer. 2010, 201-208. DOI: https://doi.org/10.1007/978-3-642-13214-8_26
  • Vazquez M, Carmona-Saez P, Nogales-Cadenas R, Chagoyen M, Tirado F, Carazo JM, Pascual-Montano A. SENT: semantic features in text. Nucleic Acids Res. 2009. D1 PMID: 19458159
  • Recuero M, Vicente MC, Martínez-García A, Ramos MC, Carmona-Saez P, Sastre I, Aldudo J, Vilella E, Frank A, Bullido MJ, Valdivieso F. A free radical-generating system induces the cholesterol biosynthesis pathway: a role in Alzheimer’s disease. Aging Cell. 2009. D1 PMID: 19239419
  • Mejía-Roa E, Carmona-Saez P, Nogales R, Vicente C, Vázquez M, Yang XY, García C, Tirado F, Pascual-Montano A. bioNMF: a web-based tool for nonnegative matrix factorization in biology. Nucleic Acids Res. 2008. Q1 PMID: 18515346
  • Abascal F, Carmona-Saez P, Carazo JM, Pascual-Montano A.ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data. Bioinformatics. 2008. D1 PMID: 18339638
  • Anton MA, Gorostiaga D, Guruceaga E, Segura V, Carmona-Saez P, Pascual-Montano A, Pio R, Montuenga LM, Rubio A.SPACE: an algorithm to predict and quantify alternatively spliced isoforms using microarrays. Genome Biol. 2008. D1 PMID: 18312629
  • Carmona-Saez P, Chagoyen M, Tirado F, Carazo JM, Pascual-Montano A. GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists. Genome Biol. 2007. D1 PMID: 17204154
  • Pascual-Montano A, Carmona-Saez P, Chagoyen M, Tirado F, Carazo JM, Pascual-Marqui RD. bioNMF: a versatile tool for non-negative matrix factorization in biology. BMC Bioinformatics. 2006. Q1 PMID: 16875499
  • Chagoyen M, Carmona-Saez P, Gil C, Carazo JM, Pascual-Montano A. A literature-based similarity metric for biological processes. BMC Bioinformatics. 2006 . Q1 PMID: 16872502
  • Hernández-Vargas H, Ballestar E, Carmona-Saez P, von Kobbe C, Bañón-Rodríguez I, Esteller M, Moreno-Bueno G, Palacios J. Transcriptional profiling of MCF7 breast cancer cells in response to 5-Fluorouracil: relationship with cell cycle changes and apoptosis, and identification of novel targets of p53.Int J Cancer. 2006. Q1 PMID: 16557594
  • Carmona-Saez P, Pascual-Marqui RD, Tirado F, Carazo JM, Pascual-Montano A. Biclustering of gene expression data by Non-smooth Non-negative Matrix Factorization. BMC Bioinformatics. 2006 Q1 PMID: 16503973
  • Carmona-Saez P, Chagoyen M, Rodriguez A, Trelles O, Carazo JM, Pascual-Montano A.Integrated analysis of gene expression by Association Rules Discovery. BMC Bioinformatics. 2006 Feb 7;7:54. Q1 PMID: 16464256
  • Chagoyen M, Carmona-Saez P, Shatkay H, Carazo JM, Pascual-Montano A. Discovering semantic features in the literature: a foundation for building functional associations. BMC Bioinformatics. 2006. Q1 PMID: 16438716
  • A. Fazel Famili, Z. Liu, P. Carmona-Saez, A. Mullick. Knowledge Discovery in the Identification of Differentially Expressed Genes in Tumoricidal Macrophage. Lecture Notes in Computer Science, 2005. Q4 DOI: https://doi.org/10.1007/11552253_8