ImaGEO is a web tool that implements a complete and comprehensive meta-analysis workflow to analyze gene expression datasets starting directly from GEO identifiers.
Publication: Toro-Domínguez D, et al. (2019) ImaGEO: Integrative Gene Expression Meta-Analysis from GEO database. Bioinformatics.
A web tool that implements a complete workflow for meta-analysis in Genetic Association Studies that can be executed in an easy-to-use environment without programming knowledge.
Publication: Martorell-Marugan J, et al. (2017) MetaGenyo: A web tool for meta-analysis of genetic association studies. BMC Bioinformatics.
An R package for comprehensive gene expression meta-analysis
Publication: Villatoro-García JA, et al. (Under Review)
A widely used application for the functional analysis that can be used to determine biological annotations or combinations of annotations that are significantly enriched in a list of genes, proteins, miRNAs, transcription farctors and CpG sites.
Publication: Garcia-Moreno, A. et al. (2022). Functional Enrichment Analysis of Regulatory Elements. Biomedicines
An R package that implements a GSEA based approach to detect diferentially methylated regions (DMRs) and allows users to integrate gene expression and methylation data.
Publication: Martorell-Marugán J et al. (2019). mCSEA: Detecting subtle differentially methylated regions. Bioinformatics.
A database for easy exploration and analysis of expression and methylation data from a large collection of autoimmune diseases (ADs) studies.
Publication: Jordi Martorell-Marugán et al. (2021) A comprehensive database for integrated analysis of omics data in autoimmune diseases BMC Bioinformatics.
A data fusion project with an interactive web frontend that integrates COVID-19 and environmental data in Spain. DatAC is provided with powerful data analysis and statistical capabilities that allow users to explore and analyze individual trends and associations among the provided data.
Publication: Martorell-Marugán J, Villatoro-García JA, et al. (2020) DatAC: A visual analytics platform to explore climate and air quality indicators associated with the COVID-19 pandemic in Spain. Sci. Total Environ.